Common ELIXIR Service for Researcher Authentication and Authorisation

Linden M, Prochazka M, Lappalainen I, et al. Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research. 2018;7: 1199.A common Authentication and Authorisation Infrastructure (AAI) that would allow single sign-on to services has been identified as a key enabler for European bioinformatics. ELIXIR AAI is an ELIXIR service portfolio for authenticating researchers to ELIXIR services and assisting these services on user privileges during research usage. It relieves the scientific service providers from managing the user identities and authorisation themselves, enables the researcher to have a single set of credentials to all ELIXIR services and supports meeting the requirements imposed by the data protection laws. ELIXIR AAI was launched in late 2016 and is part of the ELIXIR Compute platform portfolio. By the end of 2017 the number of users reached 1000, while the number of relying scientific services was 36. This paper presents the requirements and design of the ELIXIR AAI and the policies related to its use, and how it can be used for serving some example services, such as document management, social media, data discovery, human data access, cloud compute and training services

Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers

Funding bodies are increasingly recognizing the need to provide graduates and researchers with access to short intensive courses in a variety of disciplines, in order both to improve the general skills base and to provide solid foundations on which researchers may build their careers. In response to the development of ‘high-throughput biology’, the need for training in the field of bioinformatics, in particular, is seeing a resurgence: it has been defined as a key priority by many Institutions and research programmes and is now an important component of many grant proposals. Nevertheless, when it comes to planning and preparing to meet such training needs, tension arises between the reward structures that predominate in the scientific community which compel individuals to publish or perish, and the time that must be devoted to the design, delivery and maintenance of high-quality training materials. Conversely, there is much relevant teaching material and training expertise available worldwide that, were it properly organized, could be exploited by anyone who needs to provide training or needs to set up a new course. To do this, however, the materials would have to be centralized in a database and clearly tagged in relation to target audiences, learning objectives, etc. Ideally, they would also be peer reviewed, and easily and efficiently accessible for downloading. Here, we present the Bioinformatics Training Network (BTN), a new enterprise that has been initiated to address these needs and review it, respectively, to similar initiatives and collections

Federated Identity Management for Research Collaborations

This white-paper expresses common requirements of Research Communities seeking to leverage Identity Federation for Authentication and Authorisation. Recommendations are made to Stakeholders to guide the future evolution of Federated Identity Management in a direction that better satisfies research use cases. The authors represent research communities, Research Services, Infrastructures, Identity Federations and Interfederations, with a joint motivation to ease collaboration for distributed researchers. The content has been edited collaboratively by the Federated Identity Management for Research (FIM4R) Community, with input sought at conferences and meetings in Europe, Asia and North America

GA4GH: International policies and standards for data sharing across genomic research and healthcare.

The Global Alliance for Genomics and Health (GA4GH) aims to accelerate biomedical advances by enabling the responsible sharing of clinical and genomic data through both harmonized data aggregation and federated approaches. The decreasing cost of genomic sequencing (along with other genome-wide molecular assays) and increasing evidence of its clinical utility will soon drive the generation of sequence data from tens of millions of humans, with increasing levels of diversity. In this perspective, we present the GA4GH strategies for addressing the major challenges of this data revolution. We describe the GA4GH organization, which is fueled by the development efforts of eight Work Streams and informed by the needs of 24 Driver Projects and other key stakeholders. We present the GA4GH suite of secure, interoperable technical standards and policy frameworks and review the current status of standards, their relevance to key domains of research and clinical care, and future plans of GA4GH. Broad international participation in building, adopting, and deploying GA4GH standards and frameworks will catalyze an unprecedented effort in data sharing that will be critical to advancing genomic medicine and ensuring that all populations can access its benefits

D4.3 The ELIXIR Compute Platform: A Technical Services Roadmap for supporting Life Science Research in Europe

This version of the ELIXIR Technical Services Roadmap (ELIXIR-EXCELERATE deliverable D4.3) has been written at the end of PY3 of the ELIXIR-EXCELERATE project (August 2018) and represents an update to the previous version that was established in August 2017 ( Deliverable D4.2) and will be updated again in Summer 2019 before the project ends. This version of the roadmap contains a summary of the technical work undertaken during PY3, an assessment of the Platform’s capability defined through a number of Technical Use Cases (TUCs), and an assessment of the ability of the ELIXIR Compute Platform (through these TUCs) to support scientific community-driven use cases, and the plans for the future evolution of these integrated services during PY4. The ELIXIR Compute Platform (ECP) experts have met twice this year to communicate progress in technical service integration driven by the requirements of the ELIXIR scientific communities. The ELIXIR Technical Services Roadmap focuses on requirements of four ELIXIR communities (i.e. marine metagenomics, plants, rare diseases and human data) and training. As these communities also evolve quickly, the roadmap is a living document that provides advice as to the current and future implementation activities, and is subject to change between versions that is publicly accessible and commentable

Federated Identity Management for Research Collaborations

Federated identity management (FIM) is an arrangement that can be made among multiple organisations that lets subscribers use the same identification data to obtain access to the secured resources of all organisations in the group. Identity federation offers economic advantages, as well as convenience, to organisations and their users. For example, multiple institutions can share a single application, with resultant cost savings and consolidation of resources. In order for FIM to be effective, the partners must have a sense of mutual trust. A number of laboratories including national and regional research organizations are facing the challenge of a deluge of scientific data that needs to be accessed by expanding user bases in dynamic collaborations that cross organisational and national boundaries. Driven by these needs, representatives from a variety of research communities, including photon/neutron facilities, social science & humanities, high-energy physics, atmospheric science, bioinformatics and fusion energy, have come together to discuss how to address these issues with the objective to define a common policy and trust framework for Identity Management based on existing structures, federations and technologies. This paper will describe the needs of the research communities, the status of the activities in the FIM domain and highlight specific use cases. The common vision for FIM across these communities will be presented as well the key stages of the roadmap and a set of recommendations intended to ensure its implementation

GA4GH Passport standard for digital identity and access permissions

The Global Alliance for Genomics and Health (GA4GH) supports international standards that enable a federated data sharing model for the research community while respecting data security, ethical and regulatory frameworks, and data authorization and access processes for sensitive data. The GA4GH Passport standard (Passport) defines a machine-readable digital identity that conveys roles and data access permissions (called “visas”) for individual users. Visas are issued by data stewards, including data access committees (DACs) working with public databases, the entities responsible for the quality, integrity, and access arrangements for the datasets in the management of human biomedical data. Passports streamline management of data access rights across data systems by using visas that present a data user’s digital identity and permissions across organizations, tools, environments, and services. We describe real-world implementations of the GA4GH Passport standard in use cases from ELIXIR Europe, National Institutes of Health, and the Autism Sharing Initiative. These implementations demonstrate that the Passport standard has provided transparent mechanisms for establishing permissions and authorizing data access across platforms